Radiotherapy software toolkit for 3D Slicer (SlicerRT)

Common software platform for adaptive radiotherapy, built upon existing open-source visualization and analysis tools (3D Slicer) to support collaboration through sharing valuable algorithms and datasets, and address shortcomings of existing proprietary RT toolsets.

This project is under the wings of the Software Platform and Adaptive Radiotherapy Kit project, or shortly SparKit, whose goal is to develop a software platform as a shared ,reusable and customizable software infra-structure to assist clinical translation of experimental diagnostic and therapeutic approaches. The scope of SparKit is image‐guided adaptive radiation therapy and‐guided interventions like biopsy, brachytherapy, and ablation.

Read more details at the SlicerRt webpage

Project Participants

Vinith Suriyakumar

Renee Xu

Alec Robinson

Karilee Whiteway

Franklin King

Adam Rankin

Jennifer Andrea

Mattea Welch

Csaba Pinter

Gabor Fichtinger

Andras Lasso

Related Publications

2020
Pinter, C., Olding T., L. Schreiner J., & Fichtinger G. (2020). Using Fuzzy Logics to Determine Optimal Oversampling Factor for Voxelizing 3D Surfaces in Radiation Therapy. Soft Computing. DOI Google Scholar BibTeX Pinter2020a.pdf (713.06 KB)

2019
Pinter, C., Lasso A., & Fichtinger G. (2019). Polymorph Segmentation Representation for Medical Image Computing. Computer Methods and Programs in Biomedicine. 171, 19-26. DOI Google Scholar BibTeX Pinter2019_Manuscript.pdf (707.26 KB)

2018
Poulin, E., Boudam K., Pinter C., Kadoury S., Lasso A., Fichtinger G., et al. (2018). Validation of MRI to TRUS registration for HDR prostate brachytherapy. Brachytherapy. 17, 283-290. Google Scholar BibTeX Poulin2018.pdf (2.46 MB)

2017
Poulin, E. (2017). Validation Of MRI To US Registration For Focal Hdr Prostate Brachytherapy Treatment. (Boudam, K., Pinter C., Kadoury S., Lasso A., Fichtinger G., & Menard C., Ed.).Annual Scientific Meeting of the American Brachytherapy Society. 16, S56-S57. DOI Google Scholar BibTeX Poulin2017.pdf (1.17 MB)
Sunderland, K. R., Pinter C., Lasso A., & Fichtinger G. (2017). Fractional labelmaps for computing accurate dose volume histograms. SPIE Medical Imaging. Google Scholar BibTeX Sunderland2017a.pdf (579.92 KB)
Suriyakumar, V. M., Xu R., Pinter C., & Fichtinger G. (2017). Open-source software for collision detection in external beam radiation therapy. SPIE Medical Imaging 2017. Google Scholar BibTeX Suriyakumar2017a.pdf (634.39 KB)
Suriyakumar, V. M., Xu R., Pinter C., & Fichtinger G. (2017). Collision detection for external beam radiation therapy applications in SlicerRT. 15th Annual Imaging Network Ontario Symposiuim. Google Scholar BibTeX Suriyakumar2017b.pdf (141.8 KB) Suriyakumar2017b-poster.pdf (802.83 KB)
Sharp, G. C., Pinter C., Unkelbach J., & Fichtinger G. (2017). Open Source Proton Treatment Planning in 3D Slicer: Status Update. Proceedings to the 56 Annual Meeting of the Particle Therapy Cooperative Group (PTCOG). 4, 14-83. Google Scholar BibTeX

2016
Pinter, C., Lasso A., & Fichtinger G. (2016). Dynamic management of segmented structures in 3D Slicer. Imaging Network Ontario Symposium (ImNO 2016). Google Scholar BibTeX Pinter_ImNO2016_Segmentations_v03.pdf (227.44 KB)
Sunderland, K. R., Pinter C., Lasso A., & Fichtinger G. (2016). Effects of voxelization on dose volume histogram accuracy. SPIE Medical Imaging. 97862O–97862O. Google Scholar BibTeX sunderland2016a.pdf (437.4 KB)
Alexander, K., Robinson A., Pinter C., Fichtinger G., & Schreiner J. (2016). Development of 3D Slicer Based Film Dosimetry Analysis. IC3DDose (9th International Conference on 3D Radiation Dosimetry). 847, Google Scholar BibTeX IC3DDose016 Alexander FilmSlicelet.pdf (508.41 KB)
Sunderland, K. R., Pinter C., Lasso A., & Fichtinger G. (2016). Analysis of dose volume histogram deviations using different voxelization parameters. 14th Annual Imaging Network Ontario Symposium (ImNO). Google Scholar BibTeX Sunderland2016b.pdf (299.41 KB)

2015
Schumacher, M., Lasso A., Cumming I., Rankin A., Falkson C., Schreiner J., et al. (2015). 3D-printed surface mould applicator for high-dose-rate brachytherapy. SPIE Medical Imaging 2015. 9415, Google Scholar BibTeX Schumacher2015-manuscript.pdf (739.76 KB) Schumacher2015-poster.pdf (1.7 MB)
Sunderland, K. R., Woo B., Pinter C., & Fichtinger G. (2015). Reconstruction of surfaces from planar contours through contour interpolation. SPIE Medical Imaging 2015. 9415, 94151R-94151R-8. DOI Google Scholar BibTeX Sunderland2015-manuscript.pdf (818.33 KB) Sunderland2015-poster.pdf (760.05 KB)
Andrea, J., Pinter C., & Fichtinger G. (2015). Cloud computing of anatomical similarity. 13th Imaging Network Ontario Symposium (ImNO 2015). 35. Google Scholar BibTeX Andrea2015a.pdf (156.52 KB) Andrea2015a-poster.pptx (864.04 KB)
Pinter, C., Lasso A., Wang A., Sharp G. C., Alexander K., Jaffray D., et al. (2015). Performing radiation therapy research using the open-source SlicerRT toolkit. World Congress on Medical Physics and Biomedical Engineering. DOI Google Scholar BibTeX Pinter2015.pdf (395.09 KB)
Alexander, K., Pinter C., Andrea J., Fichtinger G., & Schreiner J. (2015). 3D Slicer Gel Dosimetry Analysis: Validation of the Calibration Process. World Congress on Medical Physics and Biomedical Engineering, June 7-12, 2015, Toronto, Canada. 51, 521-524. DOI Google Scholar BibTeX Alexander2015.pdf (322.62 KB)
Andrea, J., Pinter C., & Fichtinger G. (2015). Measuring radiation treatment plan similarity in the cloud. World Congress on Medical Physics and Biomedical Engineering. 51, 432-435. DOI Google Scholar BibTeX Andrea2015b.pdf (148.84 KB)

2014
Pinter, C., Lasso A., Wang A., Sharp G. C., Jaffray D., & Fichtinger G. (2014). Improvements in SlicerRT, the radiation therapy research toolkit for 3D Slicer. ImNO 2014. 79. Google Scholar BibTeX Pinter2014-slides.pptx (4.08 MB) Pinter_ImNO2014_SlicerRT_Abstract.pdf (521.19 KB) Pinter-ImNO2014-SlicerRt_Poster_v03.pptx (1.76 MB)
Cifuentes, J., Vorauer E., Le P., Glick D., Livergant J., Pinter C., et al. (2014). Integration of SlicerRT into the clinical adaptive radiation therapy workflow: deformable image registration algorithm optimization and validation. ImNO 2014. 66. Google Scholar BibTeX
Glick, D., Vorauer E., Cifuentes J., Tonolete F., Pinter C., Fichtinger G., et al. (2014). Interfraction Variation in Dose and Position During the Treatment of Pancreatic Cancer Using Tomotherapy. ImNO 2014. 70. Google Scholar BibTeX
Lasso, A., Alexander K., Jechel C., Wang K., Schreiner J., & Fichtinger G. (2014). Running Matlab functions in 3D Slicer using MatlabBridge. ImNO 2014. 78. Google Scholar BibTeX Lasso2014b-manuscript.pdf (280.69 KB) Lasso2014b-poster.pdf (771.29 KB)
Andrea, J., Welch M., Pinter C., Alexander K., Schreiner J., & Fichtinger G. (2014). Slicelet implementation for gel dosimetry analysis. 12th Imaging Network Ontario Symposium (ImNO 2014). 63. Google Scholar BibTeX Andrea2014a.pdf (119.94 KB)
Cifuentes, J., Kirby N., Lasso A., Chin L., Pinter C., Pouliot J., et al. (2014). Customized deformable image registration using open-source software SlicerRT. American Association Physicists in Medicine (AAPM). 41 (abstract in Medical Physics), DOI Google Scholar BibTeX
Alexander, K., Pinter C., Andrea J., Fichtinger G., & Schreiner J. (2014). Implementation of an efficient workflow process for gel dosimetry using 3D Slicer. IC3DDose. Google Scholar BibTeX Alexander2014.pdf (456.87 KB)
Cumming, I., Joshi C.P., Lasso A., Rankin A., Falkson C., Schreiner J., et al. (2014). 3D Printed Patient-Specific Surface Mould Applicators for Brachytherapy Treatment of Superficial Lesions. American Association Physicists in Medicine (AAPM). 41 (abstract in Medical Physics)(6), DOI Google Scholar BibTeX Cumming2014.pdf (148.57 KB)

2013
Livergant, J., Vorauer E., Agbanti A., Lasso A., Pinter C., Fichtinger G., et al. (2013). Investigation of daily deformable image registration for adaptive radiation therapy in head and neck cancer. CARO COMP 2013 – Innovations in Imaging. Google Scholar BibTeX
Pinter, C., Lasso A., Wang A., Jaffray D., & Fichtinger G. (2013). SlicerRT sets new standard for radiation therapy research tools. ECR Today 2013. 19. Google Scholar BibTeX Pinter2013b.pdf (122.27 KB)
Chin, L., Wronski M., Livergant J., Agbanti A., Yohan D., Balogh J., et al. (2013). Integration of SlicerRT into the Radiation Therapy Clinical Workflow. ImNO2013 - Imaging Network Ontario Symposium. Google Scholar BibTeX Chin2013.pdf (73.58 KB)
Pinter, C., Lasso A., Wang A., Jaffray D., & Fichtinger G. (2013). SlicerRT – Radiation therapy research toolkit for 3D Slicer. ImNO2013 - Imaging Network Ontario Symposium. Google Scholar BibTeX Pinter_ImNO2013_SlicerRT.pdf (318.14 KB)

2012
Pinter, C., Lasso A., Wang A., Jaffray D., & Fichtinger G. (2012). Application of the SlicerRT toolkit for image-guided radiation therapy research. Medical Image Computing and Computer-Assisted Intervention (MICCAI 2012) - Image-Guidance and Multimodal Dose Planning in Radiation Therapy. Google Scholar BibTeX Pinter2012c.pdf (74.97 KB)
Pinter, C., Lasso A., Wang A., Jaffray D., & Fichtinger G. (2012). SlicerRT - Radiation therapy research toolkit for 3D Slicer. Medical Physics. 39, 6332/7. DOI Google Scholar BibTeX Pinter2012-manuscript.pdf (676.7 KB) Pinter2012.pdf (1.56 MB)
Pinter, C., Lasso A., Wang A., & Fichtinger G. (2012). SlicerRT – Radiotherapy toolkit for 3D Slicer. ImNO2012 - Imaging Network Ontario Symposium. Google Scholar BibTeX Pinter2012.pdf (56.24 KB) Pinter2012-poster.pdf (572.28 KB)

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